How to organize your data?

Your pilot project just got cancelled. The promising drug target didnโ€™t pan out. The exploratory analysis is being shelved.

What happens to all that data you spent months generating? ๐Ÿ“Š

๐—ง๐—ต๐—ฒ ๐—ฐ๐—ผ๐—บ๐—บ๐—ผ๐—ป ๐˜€๐—ฐ๐—ฒ๐—ป๐—ฎ๐—ฟ๐—ถ๐—ผ:

Data lives on someoneโ€™s laptop. Project gets discontinued. Person moves to different project. Data disappears into the digital void.

Sound familiar? ๐Ÿ˜…

๐—ช๐—ต๐˜† ๐˜๐—ต๐—ถ๐˜€ ๐—บ๐—ฎ๐˜๐˜๐—ฒ๐—ฟ๐˜€:

That โ€œfailedโ€ pilot might contain insights valuable for future work. The cancelled project might have generated negative results that save someone else months of effort.

But only if you can find it. ๐Ÿ”

๐——๐—ผ๐—ฐ๐˜‚๐—บ๐—ฒ๐—ป๐˜ ๐—ถ๐˜ ๐—ณ๐—ถ๐—ฟ๐˜€๐˜:

Before you archive anything, write it down. Create an โ€œengineering reportโ€:

โ†’ Background: What were you trying to solve?

โ†’ Research question: What hypothesis were you testing?

โ†’ Methods: How did you generate this data?

โ†’ Why it ended: What changed or didnโ€™t work?

Future you will thank you. ๐Ÿ™

๐—ช๐—ต๐—ฒ๐—ฟ๐—ฒ ๐˜๐—ต๐—ฒ ๐—ฑ๐—ฎ๐˜๐—ฎ ๐˜€๐—ต๐—ผ๐˜‚๐—น๐—ฑ ๐—ด๐—ผ:

๐Ÿ† Best case: Already in a database (organized and queryable)

๐Ÿคท More common: Scattered across CSV files, scripts, documents

๐Ÿ’ก Pragmatic solution: Organized cold storage

For smaller companies, S3 bucket works well:

โ†’ Cheap long-term storage

โ†’ Flexible (dump everything)

โ†’ Easy to retrieve when needed

Downside: S3 is a digital junk drawer without organization. ๐Ÿ—ƒ๏ธ

๐— ๐—ฎ๐—ธ๐—ถ๐—ป๐—ด ๐—ถ๐˜ ๐˜„๐—ผ๐—ฟ๐—ธ:

โ†’ Consistent naming conventions

โ†’ Clear folder structure

โ†’ README files explaining contents

โ†’ Metadata manifest listing all datasets

๐—ง๐—ต๐—ฒ ๐—ถ๐—ป๐˜€๐—ถ๐—ด๐—ต๐˜:

Data archiving isnโ€™t just storageโ€”itโ€™s knowledge preservation. Todayโ€™s โ€œfailedโ€ experiment might be tomorrowโ€™s breakthrough insight, but only if someone can understand what it was and why it mattered. ๐Ÿ’ก

๐—™๐—ผ๐—ฟ ๐—น๐—ฒ๐—ฎ๐—ฑ๐—ฒ๐—ฟ๐˜€๐—ต๐—ถ๐—ฝ:

Build data sunset procedures into project workflows. The cost of storage is trivial compared to regenerating lost datasets. ๐Ÿ’ฐ

๐—ง๐—ต๐—ฒ ๐—ต๐—ฎ๐—ฟ๐—ฑ ๐˜๐—ฟ๐˜‚๐˜๐—ต:

Most biotech companies are terrible at this. Weโ€™re great at generating data, mediocre at organizing it, awful at preserving institutional knowledge when projects end.

It doesnโ€™t have to be this way. โœจ

Whatโ€™s your experience with data from discontinued projects? Have you seen companies do this well?